I think it is more complicated than that. Let's look at it from the Perspective of a Blue Jays fan. I'd personally want free agency held off longer, keep players longer, make it easier to resign your own players, Salary cap to restrain the Yankees, and I'd be fine with a salary floor and earlier arbitration to compensate, also fine with raising the minimum quite a bit. I'd be fine with a system that paid players more on average but restrained the top teams and high level free agents, while paying young players more, and forcing small market teams to spend more.
However neither the Yankees nor Tampa Bay would want that. Yankees just want to be able to make playoffs 28 of the next 30 years and use their financial might to their full advantage, Tampa would hate a salary floor or increased minimum salary, because they just want to use their brains to their full advantage while keeping a 50 million payroll.
Basically it's not just players vs owners, every owner probably wants something different.