The Braves free agent signings have been excellent value (Donaldson, McCann, Keuchel). They extended Acuna and Albies to franchise-changing surplus contracts. They have a better farm system than Toronto (largely inherited), and they have a first-place team at the MLB level that wasn't constructed by selling high-value prospects (Anthopoulos' biggest criticism in Toronto).
So yeah, Atlanta's front office is superior to Toronto's at all aspects of baseball except possibly drafting.